Software

• ReachMaster User Interface
  • Root Application Window
  • Camera Settings
  • Experiment Settings
    • ExperimentSettings
  • Robot Settings
    • RobotSettings
  • Protocols
  • Camera Interface
  • Experiment Interface
    • deliver_water()
    • flush_water()
    • get_ports()
    • move_robot()
    • read_response()
    • set_exp_controller()
    • start_experiment()
    • start_interface()
    • stop_interface()
    • toggle_led()
    • toggle_lights()
    • trigger_image()
    • write_message()
  • Robot Interface
  • Configuration Files
    • default_config()
    • load_config()
    • save_config()
    • save_tmp()
• Trodes SpikeGadgets DIO/ANALOG Data Extraction
  • Extract trodes data to python
  • Calibration Data Parser
  • Experimental DIO/ANALOG Data Parser
• Controller Data Loader
• ReachMaster Configuration Data Loader
  • 3-D Reconstruction
  • 3-D reconstruction main loop
  • Create Probability and Position Objects, per Session
  • Create Multiprocessing Function Object
  • Find Camera Files for 3D reconstruction
  • Find Each Session’s File Set’s
  • Obtain Each Rat’s Kinematic 3-D Reconstructions
  • Check to see if we have all 3 predictions inside the directory
    • Reaching Without Borders Utilities
  • Initialize RWB file
• Reaching Without Borders
• ReachPredict3D
  • Reach Prediction
    • Prediction
  • 3-D Reach Reconstruction Main Functions
• ReachSplitter
  • Trial Classification Hierarchy
  • Within-Trial Reach Segmentation
  • Overall Reach Extraction Pipeline Structure
  • Inputs, Outputs and Local Data File Requirements
    • Main Extraction Function